Ecological Science News

Thursday, July 06, 2006

Tobacco treatment for HIV

How a tobacco farm in Kent could provide a life-saving drug for millions · Genetic tweak allows HIV drug to be harvested · Environmentalists fear cross-contamination

Ian Sample, science correspondent
Tuesday July 4, 2006The Guardian
Full story

If the tobacco plants in Kent are a success, each one will provide 20 doses of an anti-HIV drug - enough to protect a woman from infection for up to three months.

Pharming is a marriage of high and low technology that capitalises on the advantages of both. Instead of needing a $500m drug manufacturing facility that takes five years to pass regulatory approval, pharming uses simple crop-growing practices that have been honed over centuries.

Professor Julian Ma, who leads the tobacco plant project at the Centre for Infection at St George's hospital in south London, acknowledges that the plants, and more importantly their pollen, have to be well contained.

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Digital Nature Guide software

http://rcampbell.bio.uci.edu/digitalnatureguide/

Digital Nature Guide is free software that allows you to make and to view natural history guides.

You can make a field guide for any type of animal or plant. When viewing a guide you can select species on the basis of characters or geographical distribution. A guide can include species texts and other illustrations. It will show a species list and has many other features.


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Amazon forest phyllosphere diversity

Phylloplane biodiversity


http://www.sciencemag.org/cgi/content/abstract/312/5782/1917

http://www.sciencemag.org/cgi/reprint/312/5782/1917.pdf

Science 30 June 2006:
Vol. 312. no. 5782, p. 1917
DOI: 10.1126/science.1124696


Brevia:

Bacterial Diversity in Tree Canopies of the Atlantic Forest
M. R. Lambais* et al

"We found an extraordinary level of bacterial biodiversity in the tree leaf canopy of a tropical Atlantic forest by using culture-independent molecular methods. Our survey suggests that each tree species selects for a distinct microbial community. Analysis of the bacterial 16S ribosomal RNA gene sequences revealed that about 97% of the bacteria were unknown species and that the phyllosphere of any one tree species carries at least 95 to 671 bacterial species. The tree canopies of tropical forests likely represent a large reservoir of unexplored microbial diversity. "


*Department of Soils and Soil Science, University of São Paulo, Piracicaba, São Paulo

"The leaf surface, also known as the phyllosphere, is one of the most common habitats for terrestrial microorganisms,
but almost nothing is known about the diversity of microorganisms that inhabit this environment. Here, we report a survey of bacterial diversity in the leaf canopy of a tropical Atlantic forest. The Atlantic Forest of Brazil is a biodiversity
hotspot that has been reduced to less than 8% of its original size over the past 4 centuries and is considered to be the oldest forest on the planet, containing about 20,000 vascular plant species, of which about one-half are endemic ... "

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Tuesday, July 04, 2006

Do butterflies smell (and what of)? Pyrazines?

Do butterflies smell of cigars?

[First published in June 2005 Bulletin of the Amateur Entomologist's Society, page 119]

During last summer I was able to answer this improbable enquiry ...

In July a British entomologist, Leonard Winokur [New Scientist
"The Last Word"], mentioned that "males of many species [of butterfly] have
special scales that release scent ... They may smell of flowers, cigars and even chocolate".

Marc Abrahams asked, do they really smell of cigars?

One early reference (C.G. Barrett: The Lepidoptera of the British Isles, 1892) records that the pale clouded yellow, Colias hyale, has the scent of pine-apple - an observation attributed to "Mr Farren"*.

E.B. (Edmund Brisco) "Henry" Ford in his widely read 'New Naturalist' volume "Butterflies" (1945) tabulates the scents of a few British butterflies and includes two which smell of old cigar boxes.

He derived his table from work by F.A. Dixey (Proceedings of the
Entomological Society of London
pp.lvi-lx, 1904) and G.B. Longstaff
(Entomologist's Monthly Magazine 41: 112-114, 1905). These gentlemen
also identified male butterflies smelling of chocolate sweetmeats.
This was in some cases confirmed by two ladies, maybe Mrs Dixey and Mrs Longstaff, presumably owners of more educated noses.

Uptodate information on male butterfly scents comes from Johan Andersson of Stockholm, who told Jennifer Viegas (Discovery News, March 3, 2004) that methyl salicylate, produced by the Green-veined white, Pieris napi, puts rival males off mating.
http://dsc.discovery.com/news/briefs/20040301/antisex_print.html

My thanks to Johan Andersson for pointing out some earlier papers (Bergstrom, 1973; Tinbergen, 1942 and others). He tells me the scale odour of P. napi is citral, a blend of neral and geranial, "a common flowersmell".

There is a list of sex pheromones of Lepidoptera,
http://www-pherolist.slu.se The Pherolist.
See also http://www.phero.net/

No cigars, only sandalwood, or "old cigar boxes". Now I wonder, what
do cigars smell of, if not old butterflies?

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* Possibly Wm Farren?
Farren W (1904) The insects of Cambridgeshire. Introduction. pp139-141. The lepidoptera of Cambridgeshire. pp161-172. In Marr and Shipley (1904)
i.e. Marr JE & Shipley AE (1904) Handbook to the natural history of Cambridgeshire. Cambridge: Uuniversity Press. Not to be confused with Harmer SF & Shipley AE The Cambridge Natural History. London: Macmillan.

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Further reading:
Miriam ROTHSCHILD: Butterfly cooing like a dove. Doubleday, 1991.
Vladimir NABOKOV: Speak memory - an autobiography revisited. Weidenfeld & Nicolson, 1967. Glory - a novel. Weidenfeld & Nicolson, 1972.
Kurt JOHNSON & Steven COATES: Nabokov's blues - the scientific odyssey of a literary genius. Zoland Books, 1999.

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http://education.guardian.co.uk/obituary/story/0,,1396144,00.html

Obituary
Dame Miriam Rothschild Zoologist, naturalist, academic and eccentric who was the Queen Bee of research into parasites and their hosts

Anthony Tucker and Naomi Gryn
Saturday January 22, 2005 The Guardian

They called her the Queen Bee, and she was. Dame Miriam Rothschild, who has died aged 96, may have had little formal education but, without aspiring to academic status, she was so expert in so many fields that she gathered eight honorary doctorates, from Oxford in 1968 to Cambridge in 1999, and a fellowship of the Royal Society (1985).

...she became fascinated by the amazing range of highly aromatic pyrazines employed in a host of different roles throughout nature. "Squeeze a ladybird very, very gently," she would say, "and its characteristic aroma will be on your fingers, for days if you leave it there. That's pyrazines, and there are dozens, perhaps hundreds, of pyrazines, combining to make the aromas of life, from urine, to chocolate, to butterflies, moths and a host of plants. Pyrazines are wonderful, they are universal."

These observations sprang from the childhood memory, still vibrating, that different butterfly and moth species, often captured and kept in the house for a while as natural decorations before being released or replaced, possessed faint, elusive but quite distinctive scents.

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In his autobiography Speak, Memory, Nabokov was to write of a similar awareness when describing a butterfly chase: "the subtle perfume of butterfly wings on my fingers, a perfume which varies with the species - vanilla, or lemon, or musk, or a musty sweetish odour difficult to define." Miriam, inevitably, captured this and other butterfly quotes from him (mostly from the same source, with a couple from his novel Glory), weaving them with a myriad other fragments into her first tapestry of words, experiences and imagination, a bizarre but delightful assembly, more or less about wings, which she called Butterfly Cooing Like A Dove (1991).

Copyright: The Guardian, Anthony Tucker and Naomi Gryn
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Sensillar esterase (how moths smell to steer)

PNAS 27th Sept 2005: 102 (39): 14075-14079.
http://www.pnas.org/cgi/content/short/102/39/14075
http://www.pnas.org/cgi/reprint/102/39/14075

http://0-www.pnas.org.wam.leeds.ac.uk/cgi/content/short/102/39/14075

Rapid inactivation of a moth pheromone
Yuko Ishida and Walter S. Leal *
Maeda-Duffey Laboratory, Department of Entomology,
University of California, Davis, CA 95616
Edited by Wendell L. Roelofs, Cornell University, Geneva, NY and approved
August 16, 2005 (received for review June 27, 2005)

"We have isolated, cloned, and expressed a male antennae-specific pheromone-degrading enzyme (PDE) [Antheraea polyphemus PDE (ApolPDE), formerly known as Sensillar Esterase] from the wild silkmoth, A. polyphemus, which seems essential for the rapid inactivation of pheromone during flight.
...

"The rapid inactivation of pheromone, even faster than previously estimated, is kinetically compatible with the temporal resolution required for sustained odorant-mediated flight in moths.
...

"Our in vitro system demonstrates that stray pheromone molecules (like those dissociated from the odorant receptors) are rapidly degraded by ApolPDE. Thus, the moth olfactory system can be reset by PDEs while navigating through clean air spaces in a pheromone plume. "

Copyright: PNAS

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Tropical climate affects metabolic rate

The study appears in the journal
Proceedings of the National Academy of Sciences. http://www.pnas.org/


http://www.guardian.co.uk/science/story/0,,1765546,00.html

Researchers get warm in quest to solve evolutionary mystery

· Study shows why species evolve faster in tropics
· Climate affects metabolic rate and generation length

Ian Sample,
science correspondent
Tuesday May 2, 2006
The Guardian (c)


"Scientists believe they have cracked one of the most enduring mysteries since Charles Darwin returned from the Galapagos islands: why is there such a variety of life in the tropics?

"Scientists have proposed that evolution, the natural process that saw modern life develop out of a primitive broth, speeds up at the equator, so more species are able to flourish there. One theory is that creatures living along the equator are more likely to evolve into different species for two reasons: firstly, they have a higher rate of metabolism, which leads to more genetic mutations; secondly, they have shorter generations, so genetic changes can be rapidly passed down.

"Tropical plants were taken from New Guinea, north-eastern Australia, Borneo, India, Tahiti and South America, with temperate species plucked from North America, southern Australia, New Zealand and Eurasia.

"Dr Wright [Shane Wright, a plant geneticist at the University of Auckland] said the study supported the idea that the equator was home to the lion's share of the world's species because organisms there respond to the warm conditions by speeding up their metabolism and reproducing faster.

""Biodiversity is always much higher in the tropics. The closer you go to the equator, the more species you have and that is true for viruses, bacteria, plants, mammals, the whole lot," said Francois Balloux, a geneticist at Cambridge University. "In many cases, these ecosystems are very complex, so this offers many niches and it is easier for populations to split.""


Read more ....

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Vanishing forests of Himalaya

THIS ARTICLE APPEARS IN NEW SCIENTIST MAGAZINE ISSUE: 20 MAY 2006

Author: EMMA YOUNG

IF REPORTING ON THIS STORY, PLEASE MENTION NEW SCIENTIST AS THE SOURCE AND, IF PUBLISHING ONLINE, PLEASE CARRY A HYPERLINK TO: http://www.newscientist.com NEW SCIENTIST magazine online

UK CONTACT - Claire Bowles, New Scientist Press Office, London:
Tel: +44(0)20 7611 1210 or email claire.bowles@rbi.co.uk

US CONTACT – New Scientist Boston office:
Tel: +1 617 386 2190 or email kyre.austin@reedbusiness.com

http://www.newscientist.com/article/mg19025525.400?DCMP=NLC-nletter&nsref=mg19025525.400

Himalayan forests are quietly vanishing

18 May 2006
NewScientist.com news service
Emma Young (c)

THE Himalayas may never be the same again. The forests growing on the roof of the world are disappearing, and the rate of deforestation is so rapid that a quarter of animal and plant species native to this biodiversity hotspot, including tigers and leopards, could be gone by the end of the century.

Worse, the Indian government is oblivious to the problem because official figures erroneously suggest that forest cover will rise rather than fall. This mistake has led to the approval of new schemes, such as hydroelectric dams, that will exacerbate the devastation.

The Himalayan region has long been recognised as extremely rich in animal and especially plant diversity. For instance, a paper published last year in *Science (vol 308, p 405) concluded that Himalayan watersheds harbour more diverse ecosystems than the Amazon. "Himalaya's importance as a biodiversity-rich area and its need for conservation cannot be overemphasised," says Maharaj Pandit of the University of Delhi ...

From issue 2552 of New Scientist magazine, 18 May 2006, page 20 (c)

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*Fragmentation and Flow Regulation of the World’s Large River Systems

Christer Nilsson, Catherine A. Reidy, Mats Dynesius, Carmen Revenga

A global overview of dam-based impacts on large river systems shows that over half (172 out of 292) are affected by dams, including the eight most biogeographically diverse. Dam-impacted catchments experience higher irrigation pressure and about 25 times more economic activity per unit of water than do unaffected catchments. In view of projected changes in climate and water resource use, these findings can be used to identify ecological risks associated with further impacts on large river systems.

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Biodiversity & Conservation, DOI: 10.1007/s10531-006-9038-5

http://www.eurekalert.org/pub_releases/2006-05/ns-hfd051706.php

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Ecos (c) report on Herbarium in Armenia



Ecos April/May 2006 pp.24-27

"Professor Gabrielian is renowned in world botany, yet she sits in a small room stacked high with fading hope and memories, surrounded by her lifelong collection
and the 11 weighty monographs she has authored and published. It is a priceless repository but has no clear future or home when she and her septuagenarian
colleagues can no longer work.

"She opens her arms indicating the piles of newspapers that hide tens of thousands of dried, pressed specimens. ‘Some of the most beautiful and rare wild plants
on the planet are here,’ she says. ‘And like all plants they hold crucial places in delicately balanced ecosystems. Some of these plants come from landscapes that swing from plus 40 to minus 40 degrees Celsius between summer and winter. It is vitally important to find out what plants like this can teach us.’

"Eleonora Gabrielian has been collecting since she was a student in 1946. That same year she met her husband, who then worked alongside her for the next four decades. He died in 1994, after a bitter winter when there was no heating at all.

"‘Perhaps we are crazy,’ says Professor Gabrielian solemnly. ‘We are paid 74 000 drams [US$24] a month and we each have to put in 20 000 drams for electricity.
But botany is our life. It is the science of life and it keeps us going. Future generations will need this knowledge if they are to sustain the planet’s biodiversity … but I am 76 years old and I need to be able to put what’s in my head into the heads of future generations.’"

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Copyright: Ecos (CSIRO) 2006
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Oceanic productivity

Nature (c)

The Southern Ocean biogeochemical divide

"The Southern Ocean has central roles in carbon dioxide exchange between the oceans and the atmosphere, and in nutrient supply to the rest of the world's oceans but these are physically separated due to the nature of ocean circulation, creating a biogeochemical divide. The area south of the divide has the most important influence on carbon dioxide exchange with the atmosphere; while the area to the north has the most significant effect on global oceanic productivity. "

Nature (c) 22 June 2006 pp.964-967
I. Marinov, A. Gnanadesikan, J. R. Toggweiler and J. L. Sarmiento
10.1038/nature04883

"Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air–sea balance of CO2 and global biological production1–8. Box model studies1–4 first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2 ). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling preindustrial atmospheric CO2 because it serves as a lid to a larger volume of the deep ocean5,6. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide7 and in controlling global biological production8. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air–sea CO2 balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model.

"We demonstrate that atmospheric CO2 and global biological export production are controlled by different regions of the Southern Ocean. The air–sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

"Recent palaeoceanographic literature points out that different parts of the Southern Ocean have responded differently to climate Change ...
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Wound healing plant "lloto"

http://education.guardian.co.uk/higher/news/story/0,,1804270,00.html

Extract from Peruvian plant could speed up wound healing
Alok Jha, science correspondent
Friday June 23, 2006
The Guardian (c)

A traditional medicine from Peru can radically speed up the healing of wounds. In tests, injuries treated by an extract of the plant Anredera diffusa healed more than 40% faster than normal.
Scientists said the plant's active ingredient, oleanolic acid, could speed up the healing of cuts and abrasions as well as easing the pain of ulcer sufferers. "Impaired wound healing may cause severe health-related complications, such as infections and tissue necrosis," write the researchers in the Journal of Natural Products [link below], published today[sic].

"These ailments have spurred the search for wound-healing agents from ethnomedicinal sources."

Gerald Hammond, a chemist at the University of Louisville, Kentucky, who led the research, said that his work was based on botanical observations on A. diffusa, known locally as lloto, that had been made by Peruvians for centuries. Locals normally use wet lloto leaves as a dressing for wounds. Professor Hammond's team extracted the oleanolic acid, a chemical already available in skin care products.

His team applied oleanolic acid to a group of mice with wounds and measured how quickly they healed. "You measure how much weight it takes to reopen the wound - the more weight it takes compared to the control, the better," said Prof Hammond. His team found that the mice treated with oleanolic acid healed 43% faster than the untreated mice. The best results were obtained by applying 40 micrograms of oleanolic acid per gram of a mouse's body weight.
How oleanolic acid does its job is a mystery. "That's a very difficult question. Wound healing occurs in several stages and each stage is not well understood," said Prof Hammond.

Even so, he said that there was an important market for drugs that could speed recovery from wounds. "People don't pay too much attention to wound healing because most of us have no problem with it," he said. "But there's a number of people that have problems." He cited the example of diabetics, many of whom have problems with wounds because of poor circulation, and people who suffer from bed sores. "It's not cancer, HIV or heart attack, but there is a market for it."

Though Prof Hammond's team only looked at external wounds, oleanolic acid had been used, in previous experiments, to treat a wide range of conditions such as psoriasis and gastric ulcers. For surface wounds, he said the chemical could easily be developed into an ointment.
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<http://0-pubs.acs.org.wam.leeds.ac.uk/cgi-bin/sample.cgi/jnprdf/2006/69/i06/pdf/np0601152.pdf>
As reported in The Guardian [above]

In Vivo Wound-Healing Activity of Oleanolic Acid Derived from the Acid Hydrolysis of Anredera diffusa

Gustavo Moura-Letts,§ Leo´n F. Villegas,† Ana Marcüalo,§ Abraham J. Vaisberg,‡,^ and Gerald B. Hammond*,§,^ Departamento de Ciencias Farmace´uticas, Universidad Peruana Cayetano Heredia, Apartado 4314, Lima 100, Peru´,
Departamento de Microbiologı´a y Laboratorios de InVestigacio´n y Desarrollo, Universidad Peruana Cayetano Heredia, Apartado 4314, Lima 100, Peru´,
And Department of Chemistry, University of Louisville, Louisville, Kentucky 40292

Received March 15, 2006
Anredera diffusa is used as a wound-healing agent in traditional Peruvian medicine. Acid hydrolysis of the bioactive ethanolic extract, followed by in vivo activity-guided fractionation, yielded oleanolic acid, with a wound-healing activity equivalent to 42.9% (p < 0.01) above the control. The highest cicatrizant activity in mice was obtained by applying 40 íg of oleanolic acid per gram of body weight.
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Rainforest book

Thomas MARENT
Rainforest: a photographic journey.
UK publication September 2006 Penguin/Dorling Kindersley http://www.penguin.co.uk/static/packages/uk/aboutus/history.html


140631530x @ 25 GBPounds